DNA biomarker list

140 Biomarkers

ID Biomarker Location Application Reference
129P53 mutationColon, RectumPrognosisOkubo R et al. Oncol Rep. 2001
167Tumor-associated DNAColon, RectumPrognosisLecomte T et al. Int J Cancer. 2002
201Fecal DNAColon, RectumDiagnosisBoynton KA et al. Clin Chem. 2003
391Circulating cell-free DNAColon, RectumDiagnosisSchwarzenbach H et al. Ann N Y Acad Sci. 2008
400Circulating DNAColon, RectumTreatmentZitt M et al. Dis Markers. 2008
407UbcH10 geneNo DataDiagnosis, PrognosisChen S et al. J Cancer Res Clin Oncol. 2010
431NGX6No DataDiagnosis, Prognosis, TreatmentLiu M et al. BMC Cancer. 2010
434ABCB1/MDR1 gene polymorphismsNo DataPrognosisBalcerczak E et al. Int J Colorectal Dis. 2010
460Long interspersed nucleotide element-1 (LINE-1)No DataPrognosisKawakami K et al. Cancer Sci. 2010
471TLR-3 polymorphismNo DataPrognosisCastro FA et al. Eur J Cancer. 2011
479Methylation of DSC3No DataPrognosisCui T et al. Br J Cancer. 2011
508CLOCK gene polymorphismsColon, RectumPrognosisZhou F et al. Cancer. 2012
554rs1954727 in ANGPT1Colon, RectumPrognosisDai J et al. PLoS One. 2012
565Leucine-rich repeat-containing G protein-coupled receptor 5 (LGR5)No DataPrognosisValladares-Ayerbes M et al. Int J Mol Sci. 2012
589MDM2 SNP309Colon, RectumPrognosisChaar I et al. Appl Immunohistochem Mol Morphol. 2013
607VEGF -2578C>AColon, RectumPrognosisJang MJ et al. Int J Clin Oncol. 2013
610Leucine-rich repeat-containing G protein-coupled receptor 5 (LGR5)No DataPrognosis, TreatmentWu XS et al. World J Surg Oncol. 2012
665Leucine-rich repeat-containing G protein-coupled receptor 5 (LGR5)Colon, RectumTreatmentHsu HC et al. Int J Colorectal Dis. 2013
741Free circulating DNA (FCDNA)Colon, RectumPrognosisCassinotti E et al. Int J Surg. 2013
760Leukocyte RTLColon, RectumPrognosisChen Y et al. Ann Oncol. 2014
773Leucine-rich repeat-containing G protein-coupled receptor 5 (LGR5)No DataPrognosisHe S et al. Biomed Pharmacother. 2014
778hMLH1Colon, RectumPrognosisWang Y et al. Med Oncol. 2014
779Tescalcin (TESC)ColonDiagnosisKang YH et al. Oncotarget. 2014
788Astrocyte elevated gene-1 (AEG-1)No DataPrognosisGnosa S et al. Br J Cancer. 2014
821Leucine-rich repeat-containing G protein-coupled receptor 5 (LGR5)No DataDiagnosis, TreatmentHsu HC et al. Cell Signal. 2014
849ALU115Colon, RectumDiagnosisHao TB et al. Br J Cancer. 2014
854Long interspersed nucleotide element-1 (LINE-1)Colon, RectumPrognosisInamura K et al. J Natl Cancer Inst. 2014
858CpG island methylation phenotype (CIMP)ColonPrognosisLi X et al. Biomed Res Int. 2014
867Rs6475526Colon, RectumPrognosisLu S et al. PLoS One. 2014
895mTORColon, RectumPrognosisWu S et al. Int J Clin Exp Pathol. 2015
896LC3Colon, RectumPrognosisWu S et al. Int J Clin Exp Pathol. 2015
903Leucine-rich repeat-containing G protein-coupled receptor 5 (LGR5)No DataTreatmentLin YU et al. Oncol Lett. 2015
913Retinoid-interferon-induced mortality-19 (GRIM-19)Colon, RectumPrognosisHao M et al. Hum Pathol. 2015
914PLA2G4C SNP (rs1549637)No DataPrognosisOlsen RS et al. Acta Oncol. 2016
916Wilms' tumor gene (WT1)No DataPrognosisMiyata Y et al. Cancer Biomark. 2015
947Forkhead box C2 (Foxc2)No DataPrognosisYang C et al. Oncol Lett. 2016
953CYP24A1Colon, RectumPrognosisSun H et al. Hum Pathol. 2016
956RAS mutationColonPrognosisOsumi H et al. Int J Cancer. 2016
957RAS mutationColonPrognosisOsumi H et al. Int J Cancer. 2016
984Methylated ctDNA (MetctDNA)No DataPrognosisGarrigou S et al. Clin Chem. 2016
994Leucine-rich repeat-containing G protein-coupled receptor 5 (LGR5)Colon, RectumPrognosisStanisavljević L et al. Acta Oncol. 2016
1002Seven-gene signature (NHLRC3, ZDHHC21, PRR14L, CCBL1, PTPRB, PNPO,, PPIP5K2)Colon, RectumPrognosisChen H et al. Oncotarget. 2016
1016Rassf1a rs2236947No DataPrognosisSebio A et al. Pharmacogenomics J. 2016
1056Cell-free DNA (cfDNA)Colon, RectumDiagnosisNagai Y et al. Oncotarget. 2017
1147TNFRSF10CColon, RectumPrognosisZhou, C et al. PeerJ. 2018
1153IL-13 SNP rs1800925, IL-4 SNP rs2243250Colon, RectumNo DataShamoun, L et al. Clin Chim Acta. 2018
1156IL-17A G197AColon, RectumDiagnosisAl Obeed, O A et al. Cancer Manag Res. 2018
1158Circulating cell-free DNA (cfDNA)No DataDiagnosis, PrognosisNiu, Z et al. Acta Biochim Biophys Sin (Shanghai). 2018
1178CDO1 methylationColonPrognosisYokoi, K et al. Ann Surg Oncol. 2019
1181FCGR2AColon, RectumPrognosisShepshelovich, D et al. Cancer Med. 2018
1212G4C14-A4T14 polymorphismNo DataNo DataMeng, J et al. Biosci Rep. 2018
1234liver kinase B1 gene (LKB1, also known as serine/threonine kinase 11, STK11)Colon, RectumNo DataChen, Y et al. Oncol Rep. 2019
1237p16 promoter methylationColon, RectumDiagnosis, PrognosisKaram, R A et al. J Cell Biochem. 2018
1245TNF-α -238 G/A polymorphismColon, RectumNo DataHuang, X et al. Biosci Rep. 2019
1246formin 2 (FMN2)Colon, RectumDiagnosisLi, D J et al. World J Gastroenterol. 2018
1249APC2No DataNo DataHe, Y et al. Dis Markers. 2018
1269Six-gene Assay(CEA, EpCAM, CK19, MUC1, EGFR and C-Met)No DataNo DataShou, X et al. Mol Oncol. 2019
1281circulating tumor DNA (ctDNA)ColonDiagnosisOsumi, H et al. Cancer Med. 2019
1301significant difference in TRBV and TRBJ gene usageNo DataDiagnosis, TreatmentLiu, X et al. Mol Genet Genomic Med. 2019
1322WNT10A methylationColon, RectumDiagnosisJiang, H et al. Am J Transl Res. 2018
1323large variation in DNMT1 expressionColonNo DataHoneywell, R J et al. Nucleosides Nucleotides Nucleic Acids. 2018
1327SOX9 and TGFBI geneColon, RectumDiagnosisZhang, H et al. J Cell Biochem. 2019
1349c-MYCColon, RectumPrognosisLee, K S et al. Sci Rep. 2019
1354Hypoxia-related gene (HRG)Colon, RectumPrognosisLee, J H et al. Sci Rep. 2019
1366KRAS mutationsNo DataNo DataXie, W et al. Cancer Med. 2019
1374ATM geneNo DataPrognosisRandon, G et al. Sci Rep. 2019
1375CHST7 methylationColon, RectumNo DataBi, H et al. Dig Dis Sci. 2019
1389MPPED2Colon, RectumDiagnosisGu, S et al. Clin Epigenetics. 2019
1397GST Pi 1 (GSTP1) polymorphismColon, RectumNo DataKatayanagi, S et al. Oncol Lett. 2019
1411stool DNA-based SDC2 methylation(syndecan-2)No DataNo DataHan, Y D et al. Clin Epigenetics. 2019
1413circulating CCAT2Colon, RectumPrognosisWang, L et al. Biomed Pharmacother. 2019
14184-gene signature (ACVR2A, APC, DOCK2, and POLE)Colon, RectumNo DataGe, W et al. Cancer Manag Res. 2019
1428The promoter of OGDHL gene hypermethylatedColon, RectumDiagnosisKhalaj-Kondori, M et al. Curr Probl Cancer. 2019
1434rs5030740Colon, RectumPrognosisLi, S et al. J Gastroenterol. 2019
1436RAS mutationNo DataNo DataMorgan, Z et al. J Surg Res. 2019
1438KCNQ1OT1ColonPrognosisZhang, K et al. Future Oncol. 2019
1657Cell-free circulating DNAs (cfcDNAs)Colon, RectumPrognosisAgah S et al. Cancer Invest. 2017
1719circulating tumour DNA(ctDNA)RectumPrognosisTie J et al. Gut. 2019
1725DNA methylation at BMP3 and VAV3Colon, RectumDiagnosisKisiel JB et al. Clin Gastroenterol Hepatol. 2019
1770circulating tumour DNA(ctDNA)Colon, RectumPrognosisYang YC et al. Biosci Rep. 2018
1829early ctDNAColon, RectumPrognosis, TreatmentVandeputte C et al. Oncotarget. 2018
1895MPO SNP rs2333227Colon, RectumPrognosisMeng Q et al. Cancer Res. 2018
1991BRAFV600E mutationColon, RectumPrognosisEachkoti R et al. Mutagenesis. 2018
2058SLC30A10, CLDN1, INHBA methylationColon, RectumDiagnosisKerachian, M. A et al. Sci Rep. 2020
2083Genomic variationRectumTreatmentDouglas, J. K et al. Mol Cell Oncol. 2020
2086cfDNAColon, RectumPrognosisZhong, Y et al. Cell Mol Biol (Noisy-le-grand). 2020
2090SOX21Colon, RectumDiagnosisMoradi, K et al. Indian J Cancer. 2020
2093KCNB1Colon, RectumTreatmentBarbirou, M et al. Tumour Biol. 2020
2096PALB2Colon, RectumPrognosisPan, W et al. Comput Biol Chem. 2020
2098(ct) DNAColon, RectumPrognosisBeagan, J. J et al. J Clin Med. 2020
2100NLRP1 rs12150220 and SRL rs13334970Colon, RectumNo DataBarat, A et al. Sci Rep. 2020
2102SEPT9Colon, RectumTreatmentLeon Arellano, M et al. Dis Markers. 2020
2111Methylation of SEPT9 and SDC2Colon, RectumDiagnosisZhao, G et al. Front Genet. 2020
2133ctDNAColon, RectumPrognosisBoysen, A. K et al. Acta Oncol. 2020
2154ctDNAColon, RectumPrognosis, TreatmentUnseld, M et al. Int J Cancer. 2021
2155ctDNAColon, RectumPrognosis, TreatmentZou, D et al. Carcinogenesis. 2020
2157SCTRColon, RectumDiagnosisLi, D et al. Cancer Sci. 2020
2161SMAD3Colon, RectumDiagnosisAnsar, M et al. Int J Mol Sci. 2020
2164INHBBColon, RectumPrognosisYuan, J et al. Biomed Res Int. 2020
2165Genomic amplification of chromosome 20q13.33Colon, RectumDiagnosis, PrognosisBui, V. M et al. BMC Med Genomics. 2020
2172ctDNAColon, RectumPrognosisPetrillo, A et al. Curr Drug Targets. 2021
2174CEP55Colon, RectumDiagnosis, PrognosisLin, K et al. Immun Inflamm Dis. 2021
2179CLCA1Colon, RectumDiagnosis, PrognosisWei, F. Z et al. Front Oncol. 2020
2187cfDNAColon, RectumPrognosisØrntoft, M. W et al. Int J Cancer. 2021
2193SOX21 promoter methylationColon, RectumDiagnosisMoradi, K et al. Indian J Cancer. 2021
2195RASColon, RectumPrognosisSchrock, A. B et al. Oncologist. 2021
2196ctDNAColon, RectumPrognosisBoniface, C et al. Diagnostics (Basel). 2021
2201Small EVs-Associated DNAColon, RectumPrognosisGalbiati, S et al. Pharmaceuticals (Basel). 2021
2206SHISA3Colon, RectumDiagnosisTang, S. H et al. Chin J Physiol. 2021
2213ctDNARectumPrognosisVidal, J et al. Clin Cancer Res. 2021
2221circulating MT-ND1Colon, RectumDiagnosis, PrognosisXu, Y et al. Bosn J Basic Med Sci. 2021
2224SELEColon, RectumPrognosisLi, N et al. J Int Med Res. 2021
2233EHD3Colon, RectumPrognosisWang, Y. H et al. Biomedicines. 2021
2235IL2RBColon, RectumTreatmentAlderdice, M et al. NAR Genom Bioinform. 2021
2236cfDNAColon, RectumTreatmentPastor, B et al. Mol Oncol. 2021
2240SDC2 and TFPI2Colon, RectumDiagnosisZhang, W et al. Cancer Manag Res. 2021
2241FAM83A and IDO1Colon, RectumPrognosisLiu, Z et al. Front Oncol. 2021
2251PDE9AColon, RectumPrognosisSusmi, T. F et al. BMC Cancer. 2021
2258ctDNAColon, RectumPrognosis, TreatmentTo, Y. H et al. Pharmacoeconomics. 2021
2265cfDNAColon, RectumPrognosisZhu, F et al. J Oncol. 2021
2275METTL14RectumPrognosisCai, C et al. Front Oncol. 2021
2293LAMTOR5Colon, RectumPrognosisZaniani, N. R et al. Mol Biol Rep. 2021
2301NRIP1Colon, RectumPrognosisPalassin, P et al. Cancers (Basel). 2021
2303c-Met/EGFRColon, RectumPrognosis, TreatmentLawal, B et al. Front Pharmacol. 2021
2304SYK GeneColon, RectumPrognosisBiswas, P et al. J Pers Med. 2021
2315DNA ploidyColon, RectumPrognosisPeng, J et al. Cancer Cell Int. 2021
2318Complement component 3 (C3)Colon, RectumPrognosis, TreatmentHe, X. S et al. Front Mol Biosci. 2021
2319ctDNAColon, RectumPrognosisBenhaim, L et al. Eur J Cancer. 2021
2327KIAA1522Colon, RectumPrognosisYi, X et al. Cell Signal. 2022
2349Circulating Cell Free DNA (cfDNA)Colon, RectumPrognosis, TreatmentEskander, N. S et al. Asian Pac J Cancer Prev. 2022
2360ctDNAColon, RectumPrognosisHallermayr, A et al. Cancers (Basel). 2022
2368mSEPT9Colon, RectumPrognosisHuang, M et al. BMC Gastroenterol. 2022
2369SLC6A1Colon, RectumPrognosisWang, Q. Q et al. Dis Markers. 2022
2371FREM2 MutationColon, RectumPrognosisDu, H et al. Front Mol Biosci. 2022
2386Septin 9 Gene HypermethylationColon, RectumRecurrencesLeon Arellano, M et al. Diagnostics (Basel). 2022
2395AHCYL1Colon, RectumPrognosis, TreatmentLi, X et al. J Oncol. 2022
2401cg01419567 (ZFHX4), cg26238800 (ZNF334), cg13562911 (ELOVL2), cg16475705 (UNC5C), cg06921368 (LOC146880), cg20506550 (SFMBT2) and cg12087643 (GFRA1)Colon, RectumPrognosisWang, W et al. Front Oncol. 2022
2422Circulating tumour DNA (ctDNA)Colon, RectumPrognosisJones, R. P et al. Eur J Cancer. 2021
2429WIF1 methylationColon, RectumDiagnosisHu, H et al. Oncotarget. 2018
2432SFRP1, SFRP2, NDRG4 and VIM DNA hypermethylationColon, RectumDiagnosisMojtabanezhad Shariatpanahi, A et al. PLoS One. 2018